Gastric-brooding Frogs

We only knew of the gastric-brooding frog for an incredibly small amount of time, they were discovered and classified in the mid 70’s and were extinct within a decade.  So we really never knew about these frogs and by time their incredible adaptation was discovered and going to be studied, they were gone.  Their adaptation is that they could produce a jelly-like protein called prostaglandin which would turn off the acidic genes in their stomach.  Then the mothers would swallow their eggs and nourish them within their bellies.  As discussed in the “Medical Benefits to De-Extinction” this is something scientists and medical professionals have been itching to study, they want to study these genes and that protein and assess if it could be useful in human patients with stomach problems.

There is an organization out of the University of Newcastle in Australia, called the Lazarus Project who are working on reviving indigenous Australian species; such as the dodo bird, the thylacine (commonly known as the Tasmanian tiger), and the gastric-brooding frog.

Frogs as a Historical Cloning Model

It is difficult to say where the majority of The Lazarus Project’s efforts are going, but they seem to have been most successful so far in the De-Extinction of the gastric-brooding frog.  This makes sense, because frogs historically have been known to be better cloning candidates than mammals.  In fact, the earliest successful clones were done with frogs and the scientists working on the project talked about the simplicity of the project.  In 1952, Thomas King and Robert Briggs had an idea to enucleate frog eggs and insert the nucleus from early developmental cells in their place.  They choose frog eggs because they were big and have tendencies to be resilient in comparison to other species.  At this time, much less was known about genetics and DNA was still a decade away from discovery.  But the ambitious scientists pushed on and it resulted in them producing embryos which turned into tadpoles and eventually morphed into adult frogs.  Amazed by their work 6 years later in 1958, John Gurdon wanted to continue their experiments and wondered if a clone could be produced from already differentiated somatic cells, or simply regular adult cells.  So instead of using blastula cells (early embryonic undifferentiated stem cells) as the implants, Gurdon took intestine cells and implanted to nucleus into the hallowed out eggs.  This experiment actually resulted in the first successful clones,  Briggs and Kings frogs are not considered clones because they were using stem cells, where as Gurdon was using the cells of an adult.

Frogs as a De-Extinction Model

The Lazarus Project has been working on bringing back the gastric-brooding frogs using the same methods described by King, Briggs, and Gurdon; only now they are using the nucleus of cells of a species that is extinct.  The group has had tissues stored in regular deep freezers since the 80’s and are not using these cells to bring back the mysteriously unique species.  In March 2013 they published a major step towards this.  The Lazarus Project has reported that through somatic-cell nuclear transplantation they have acquired an early embryonic state of cell development and they had a cell that was dividing.  The embryo unexpectedly stop diving and eventually died, but the scientists confirmed that the embryo was genetically a gastric-brooding frog.  The scientists are also very confident that this was a technical problem and not a biological problem, meaning they are confident the science will allow them to bring back this wonderful frog.

gastric_brooding_frog_by_savethefrogs

Wooly Mammoth

Pleistocene Epoch was host to large animals called megafauna-todays megafauna include elephants, giraffes, rhinos, and hippos.  During Pleistocene this list was much larger including wooly rhinos, giant sloths, saber-toothed tigers, and the more famous wooly mammoth.  The mammoth has come to be the mascot of de-extinction, the one that grabs the attention of everyone, the one everyone asks about.  This proboscidean was front and center on the April 2013 National Geographic about de-extinction.  Molecular ecologist, Beth Shapiro, named her book “How to Clone a Mammoth,” stating in the prologue that this is the most common question she is asked.  She choose this title for the book and it was about the entire science of de-extinction and the mammoth is actually a very difficult candidate for de-extinction, at least at this time.  It is a great thing that there is a mascot for the science, the idea of the pre-historic giants roaming the Earth again absolutely fascinates everyone, scientists and non-scientists.

This is a scientific based website, so….

What are the scientific benefits to bringing back the mammoth?

Just north of Siberia sits Pleistocene Park, the owner Sergey Zimov is concerned with bringing back the lost Pleistocene steppe.  He is already transforming a seemingly melting wasteland, permafrost, into a thriving ecosystem.  He has introduced a few extant mammals to his park and they are really showcasing how needed mammals are in ecosystems, the fauna (animals) and flora (plants) of the park are doing much better.  However, there are still some pieces missing from his park.  He lacks apex predators and large megafauna.  Zimov, so heavily believes that the megafauna are crucial to the land that his vehicle of choice is a old beaten down war tank-yes, a war tank! Mammoths were very good at clearing paths, shoveling snow, packing and loosing soil, and transporting seeds.  His tank is also very good at this.  However, he claims that his tank does not have the…umm…fecal qualities of the mammoth; mammoths were believed to have microbial bacteria in their intestines which could germinate and shape seeds very well.  Also, as we know dung makes a very good fertilizer and 13,000 pound mammoths definitely produce their share of it.  The steppe evolved with mammoths (and many other extinct or displaced species) and most definitely requires them to be fully functioning.

So, just how do you clone a mammoth? 

When you think of cloning, you think of like a Xerox machine.  Here is something and we will make a duplicate.  Well, we do not have a mammoth to put on our Xerox machine.  But, we do have mammoth aDNA and asian elephants.  Studying the aDNA of wooly mammoths, scientists are finding various genes specific to the adaptations of the species; such as: the wooly coat, the 2-inch layer of insulating fat, the enormous tusks, and a special hemoglobin, which is better suited to transport oxygen in extremely cold environments.  Using various techniques such as, CRISP-R, nuclear transfer, and iPS cells these genes could be encoded into the Asian Elephant genome, thus producing an elephant possessing mammoth adaptations.

If it walks like a mammoth, looks like a mammoth, acts like a mammoth…

…Is it a mammoth?

Well, this answer is debatable and up to negotiation.  The important part is the animal will act like a mammoth, which is crucial to the goal of preserving and reconstructing the Pleistocene steppe.  In addition, asian elephants, the closest extant species to the wooly mammoth is running out of real estate and they are frequent member of endangered species lists.  This is not to say, we should stop conserving the asian elephant and ship them all up north; but we could, in theory, give some asian elephants the adaptations they need to survive and thrive in Pleistocene Park.  It would be like giving the elephants a coat and some hot soup to go explore some new lands and be able to thrive as a species again, to regain that feeling of being an integrate link or component in a natural ecosystem.

 

Bucardo (Pyrenean Ibex)

In 2003 something amazing happened.  A group of scientists were looking straight into the eyes of something that had absolutely no business being there.  The bucardo went extinct in 2000, IUCN chalked up another tally to the extinction side and things went on.

However, 3 years later there one laid, breathing, processing, living.

The bucardo was a species of ibex, a descendent of goats.  The species graced the Pyrenean Mountains, which is what naturally separates France from Spain in Southwest Europe.  Like other species of ibex, the bucardo was very good at climbing, scaling and balancing narrow ledges.  This is perfect for the types of plants that grow on mountain sides, as we are learning in Pleistocene Park, mammals are crucial for the development and health of herbivory.  We are learning more and more about how mammals disperse seeds, fertilize soil, and what their importance is in germinating and shaping seeds.

It is believed that this once abundant species was effected by human hunting and the decline of resources for humans livestock in the region.

When the numbers of the species started to dwindle critically low, Dr. Jose Folch and his team from the Centre of Food Technology and Research of Aragon started to collect tissue samples of the bucardo.  They would set traps in Ordesa National Park in Spain and carefully obtain cells from the ears of the dainty creature.

The last remaining species was a female named, Celia.  Celia was found dead and crushed beneath a fallen tree on January 6, 2000.  So, the species went extinct right under that tree, right on that day.  By definition, January 6, 2000 would be the last day the planet ever saw a Pyrenean ibex, or bucardo.

Advanced Cell Technology is a company with labs in Massachusetts and following the death of Celia, they teamed with Dr Fernandez-Arias, Dr. Folch, and their affiliated organizations to clone Celia.

They would do this by nuclear transfer.  This is the same process that cloned Dolly the Sheep back in 1996.  They would hollow out the nucleus of an egg and then insert the nucleus of Celia’s cell and put it in the enucleated egg.

All good and fine, however, one problem…

Where is this egg coming from?

Since, the species is extinct, the living unfertilized egg of a bucardo is surely impossible to find.  What the scientists did was breed hybrids of other species of bucardos and domestic sheep, they then obtained the eggs of bucardos, domestic sheep, and the new hybrids.  These were the eggs used for the nuclear transfer cloning.

In fact, Dolly’s egg donor was not even of the same species as her.  Dolly was a Finn-Dorset domestic sheep, but the egg her nucleus was transferred to was from a Scottish Black-faced.  Dolly was born a genetic clone of the Finn-Dorset sheep her nucleus was borrowed from.

One of these things is not like the other

Even tough we have had successful clones, the science behind nuclear cloning is still developing and progressing.  The odds of having a living offspring is incredibly slim.  285 nucleus’ were transferred to create embryos and of that there was only one egg that went from embryo and was carried term to birth.

It was carried to birth.

An extinct animal was born

…and on that day extinction was not forever.

^Members of the team posing with Celia after obtaining tissue cells.  (Her eyes were covered for protection!)

Results

The clone Celia sadly died after only about 10 minutes due to severe lung defects.  Again, this is a very tricky and inaccurate science.  However, this was the first attempt at cloning an extinct species and we do have examples of other clones that have survived much longer. And as mentioned above, the field is getting better and more efficient at the science as we learn more.